PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.26833s0169.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HD-ZIP
Protein Properties Length: 843aa    MW: 92199.8 Da    PI: 5.9512
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.26833s0169.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45e-182583357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR ++k+
  Bostr.26833s0169.1.p 25 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECsilaNIEPKQIKVWFQNRRCRDKQ 83
                          56789***************************************************996 PP

2START152.14.6e-481613662202
                           HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS
                 START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 
                           +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+ +sg a+ra+g+v  +++   +e+l+d++ W +++++ e+      g  
  Bostr.26833s0169.1.p 161 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQRCSGVAARACGLVSLEPM-KIAEILKDRPSWFRDCRSLEVFTMFPAGng 248
                           7899******************************************************.7777777777***********999999999 PP

                           EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
                 START  89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                           g+++l +++++a+++l+p Rdf+++Ry+ +l  g++v++++S++     p+    s++vRae+l Sg+li+p+++g+s +++v+h +l+
  Bostr.26833s0169.1.p 249 GTIELVYMQTYAPTTLAPaRDFWTLRYTTSLDNGSFVVCERSLSGSGAGPNaasASQFVRAEMLSSGYLIRPCDGGGSVIHIVDHLNLE 337
                           ********************************************999999989999********************************* PP

                           SSXXHHHHHHHHHHHHHHHHHHHHHHTXX CS
                 START 174 grlphwllrslvksglaegaktwvatlqr 202
                           +++++ +lr+l++s+ + ++k++ ++l++
  Bostr.26833s0169.1.p 338 AWSVPDVLRPLYESSKVVAQKMTISALRY 366
                           ***********************999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3052084IPR001356Homeobox domain
SuperFamilySSF466891.11E-162187IPR009057Homeodomain-like
SMARTSM003892.0E-162288IPR001356Homeobox domain
CDDcd000866.22E-162585No hitNo description
PfamPF000461.3E-152683IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-182780IPR009057Homeodomain-like
CDDcd146863.25E-677116No hitNo description
Gene3DG3DSA:1.20.5.1706.1E-481130No hitNo description
PROSITE profilePS5084827.519151379IPR002913START domain
CDDcd088751.40E-66155371No hitNo description
SMARTSM002341.1E-37160370IPR002913START domain
Gene3DG3DSA:3.30.530.202.5E-19160365IPR023393START-like domain
SuperFamilySSF559611.13E-34160372No hitNo description
PfamPF018529.7E-46161367IPR002913START domain
PfamPF086702.3E-49695841IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MEMAVANHRE RSSDSMNRHL DSSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECS  60
ILANIEPKQI KVWFQNRRCR DKQRKEASRL QSVNRKLSAM NKLLMEENDR LQKQVSQLVC  120
ENGYMKQQLT TVVTDASCDS VVTTPQHSLR DANSPAGLLS IAEETLAEFL SKATGTAVDW  180
VQMPGMKPGP DSVGIFAISQ RCSGVAARAC GLVSLEPMKI AEILKDRPSW FRDCRSLEVF  240
TMFPAGNGGT IELVYMQTYA PTTLAPARDF WTLRYTTSLD NGSFVVCERS LSGSGAGPNA  300
ASASQFVRAE MLSSGYLIRP CDGGGSVIHI VDHLNLEAWS VPDVLRPLYE SSKVVAQKMT  360
ISALRYIRQL AQESNGEAVY GLGRQPAVLR TFSQRLSRGF NDAVNGFGDD GWSTMHCDGA  420
EDIVVAINST KHLNNISNSL SFLGGVLCAK ASMLLQNVPP AVLIRFLREH RSEWADFNVD  480
AYSAATLKAG TFAYPGMRPT RFTGSQIIMP LGHTIEHEEM LEVVRLEGHS LAQEDAFMSR  540
DVHLLQICTG IDENAVGGCS ELIFAPINEM FPDDAPLVPS GFRVIPVDAK TGDAQDLLTA  600
NHRTLDLTSS LEVGPSPENA SGNSSSSSSS SRCILTIAFQ FPFENNLQEN VAGMACQYVR  660
TVISSVQRVA MAISPSGISP SLGSKLSPGS PEAVTLAQWI SQSYTHHLGS ELLTIDSLGS  720
NDSVLKLLWD HQDAILCCSL KPQPVFMFAN QAGLDMLETT LVALQDITLE KIFDESGRKA  780
LCSDFAKLMQ QGFACLPSGI CVSTMGRHVS YEQAVAWKVF AASEDNNNLH CLAFSFVNWS  840
FV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1889940.0AF188994.1 Arabidopsis thaliana homeodomain-leucine zipper protein interfascicular fiberless 1 (IFL1) mRNA, complete cds.
GenBankAF2335920.0AF233592.1 Arabidopsis thaliana REVOLUTA mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456679.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLR0EUU00.0R0EUU0_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.8__2034__AT5G60690.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein